PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G035800.1
Common NameB456_004G035800, LOC105790277
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 340aa    MW: 37946.4 Da    PI: 8.1309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G035800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11279324655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+ l P+     +k  + a++L +AveYIk+Lq
  Gorai.004G035800.1 279 SIAERMRRTRISERMRKLQGLFPNI----DKQTNTADMLDMAVEYIKDLQ 324
                         689*********************5....588*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.018273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15276335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-10277328No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13278334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8279324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
METADYYYLQ QNQQQSCGLM RYRSMPAENR VGYDEYGSDF RSSSSSEMET LFMLCGNGSS  60
GNVSEYEEKS VKQEEEMMYQ IQSLPLENVE SSFGVGTNLG LENSMQRNGN GSNLVRQTSS  120
PSQVFSSHGL DNGFNATRKM TTLRACNGIN GEPTSTGRLY NHISFSSGPM PQIAQVENGG  180
LASNGNGRNG MNFIPNLMSD SRNNASLSGL KRARERDSDL LSGLSRLQTR NQDCRDCSTA  240
LTHQLSLPTT YEEVDVWQFQ SSVPCKIRAK RGCATHPRSI AERMRRTRIS ERMRKLQGLF  300
PNIDKQTNTA DMLDMAVEYI KDLQKQVKIL RDTKAKCSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5792851e-131JX579285.1 Gossypium hirsutum clone NBRI_GE11491 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473239.10.0PREDICTED: transcription factor bHLH130-like
TrEMBLA0A0D2MT340.0A0A0D2MT34_G
STRINGPOPTR_0009s06910.14e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-37bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]